Index
- $authMode
- $checkMax
- $checkMin
- $connection
- $connection
- $credit
- $credit
- $descriptorSpec
- $email
- $expandSubImages
- $files
- $files
- $freeServer
- $group
- $group
- $host
- $huscript_path
- $id
- $id
- $id
- $imageExtensions
- $ip
- $isDefault
- $isLoggedIn
- $isMaxIncluded
- $isMinIncluded
- $isMultiChannel
- $job
- $jobDescription
- $lastActivity
- $logfileName
- $m_AdLDAP
- $m_AdminOnly
- $m_DB
- $m_DescriptiveName
- $m_Filter_FromDate
- $m_Filter_Group
- $m_Filter_ToDate
- $m_GroupIndex
- $m_Name
- $m_Selected_Statistics
- $m_Stats_Array
- $m_Type
- $m_Username
- $m_ValidGroups
- $m_Variable
- $max
- $message
- $message
- $message
- $message
- $min
- $multiImageExtensions
- $name
- $name
- $name
- $nping
- $numberOfChannels
- $numberOfChannels
- $out_file
- $owner
- $owner
- $parameter
- $parameterSetting
- $pass
- $pid
- $pid
- $pipes
- $possibleValues
- $queue
- $receiver
- $script
- $selected
- $selectedFiles
- $sender
- $server
- $shallStop
- $shell
- $status
- $stopTime
- $subject
- $taskSetting
- $user
- $username
- $validArchiveExtensions
- $validImageExtensions
- $validImageExtensionsExtras
- $value
- __construct($username)
- __construct($sender)
- __construct()
- __construct($name, $variable, $descriptiveName, $type, $adminOnly)
- __construct()
- __destruct()
- AberrationCorrectionMode()
- AberrationCorrectionMode
- AberrationCorrectionNecessary()
- AberrationCorrectionNecessary
- AccountingDatabaseConnection()
- AccountingDatabaseConnection
- ActiveDirectory
- adaptedLateralSampleSize()
- adaptedLateralSampleSizeFor($size)
- addAllCreditsFor($credits)
- addFilesToSelection($files)
- addJob()
- AdvancedCorrectionOptions
- AdvancedCorrectionOptions()
- allFiles()
- appendScriptParameters()
- askHuCore($tool, $options = "")
- assign_rand_value($num)
- authenticate($uid, $userPassword)
- authenticate($username, $password)
- availableServer()
- availableServer()
- BackgroundOffsetPercent
- BackgroundOffsetPercent()
- BackgroundOffsetRange()
- BackgroundOffsetRange
- BackgroundOffsetUseRange()
- BackgroundOffsetUseRange
- backgroundPerChannelString()
- basename($filename)
- beDefault()
- beMultiChannel()
- beSingleChannel()
- bindManager()
- Binning
- Binning()
- BooleanParameter($name)
- BooleanParameter
- calculateNyquistRate()
- captorSizeText()
- capturingParameterNames()
- CCDCaptorSizeX
- CCDCaptorSizeX()
- check()
- check()
- check()
- checkCalculateParameter()
- checkCapturingParameter()
- checkChoiceValue($name, $label)
- checkGeometry($prefix)
- checkImageParameter()
- checkLogin($name, $password)
- checkLoginAgainstACTIVEDIR($name, $password)
- checkLoginAgainstHRMDatabase($name, $password)
- checkLoginAgainstLDAP($name, $password)
- checkMax()
- checkMicroscopeParameter()
- checkMin()
- checkMultiChannelImageParameter()
- checkNewSettingName($name)
- checkNumberOfChannels()
- checkNumericalAperture()
- checkNumericalValue($name, $label)
- checkNumericalValues($name, $label, $numberOfChannels)
- checkNyquistRate()
- checkParameter()
- checkPinholeSize()
- checkPinholeSpacing()
- checkPointSpreadFunction()
- checkProcessFinished()
- checkRange($parameterName, $originalLabel)
- checkResultImage()
- checkSampleMedium()
- checkSelectedSetting()
- checkSignalNoiseRatio()
- checkSingleChannelImageParameter()
- checkUser($name)
- checkValue($value)
- checkValue($value)
- checkValue($value)
- checkValue($value)
- checkWavelength($name)
- ChoiceParameter($name)
- ChoiceParameter
- cleanNonImages($startDir, $prefix, &$valid, &$msg)
- cleanUpFileServer($job)
- CMount()
- CMount
- combine($firstArray, $secondArray)
- combineAll($anArray)
- compareResult($file, $size = "400", $op = "close", $mode = "MIP")
- condenseStkSeries()
- condenseTiffLeica()
- condenseTimeSeries()
- connection()
- copyFrom($aJobDescription)
- copyImagesToServer($job, $server_hostname)
- copyParameterFrom($setting)
- copyPublicSetting($setting)
- copySelectedSetting($newName)
- CoverslipRelativePosition()
- CoverslipRelativePosition
- createJob()
- createNewSetting($name)
- createScript()
- createScriptVersionOne()
- createScriptVersionZero()
- createSubJobs()
- createSubJobsforFiles()
- createSubJobsOrScript()
- credit()
- credit()
- CreditOwner($id)
- CreditOwner
- credits()
- DatabaseConnection()
- DatabaseConnection
- DB_LAST_REVISION
- decAlgorithmString()
- decompressArchive($file, $type, $dest, &$okMsg, &$errMsg, $subdir = "", $imagesOnly = true)
- DeconvolutionAlgorithm
- DeconvolutionAlgorithm()
- defaultSettingName()
- defaultValue($parameterName)
- deleteFiles($files, $dir = "dest")
- deleteFromTablesWhereColumnEquals($tables, $columns, $id)
- deleteSelectedSetting()
- deleteSetting($settings)
- description()
- destFiles()
- destinationFolder()
- destinationFolder()
- destinationFolderFor($desc)
- destinationFolderTop()
- destinationForStep($stepNumber)
- destinationImageFullName()
- destinationImageName()
- destinationImageNameAndExtension()
- destinationImageNameWithoutPath()
- destroyImageString($imageName)
- display()
- display()
- displayCMLEString($numberOfChannels = 0)
- displayQMLEString($numberOfChannels = 0)
- displayString($numberOfChannels = 0)
- displayString()
- displayString($numberOfChannels = 0)
- displayString()
- displayString()
- displayString()
- displayString()
- displayStringWithoutOutputFileFormat($numberOfChannels = 0)
- displayWithoutOutputFileFormat($numberOfChannels = 0)
- downloadResults($files)
- dumpStatsTableToFile()
- email()
- emailAddress()
- emailAddress($uid)
- emailAddress($username)
- emailAddress($username)
- emailAddressFromReservationSystem($name)
- EmissionWavelength
- EmissionWavelength()
- emissionWavelengthsString()
- encrypt($string, $seed)
- endsWithNumber($string)
- errorOccured($job)
- escapeJavaScript($str)
- ExcitationWavelength()
- ExcitationWavelength
- excitationWavelengthsString()
- execute($query)
- execute($command)
- execute($command)
- executeScript($job)
- exists()
- existsHuygensProcess($pid)
- existsHuygensProcess($pid)
- existsParametersFor($settings)
- existsSetting($settings)
- expandSubImages($value)
- extension()
- ExternalProcess($host, $huscript_path, $logfileName, $errfileName)
- ExternalProcess
- fileButton($type)
- fileExtensions()
- fileExtensions($imageFormat)
- fileFormatsWith($isSingleChannel, $isVariableChannel, $isFixedGeometry)
- files()
- files()
- Fileserver
- Fileserver($name)
- filesOfType($format)
- fillStatsArray()
- findStrip($file, $type, $dir)
- fixedGeometryFileFormats()
- flatten($anArray)
- folderContains($folder, $string)
- folderContainsNewerFile($folder, $date)
- freeServer()
- fromUnixTime($timestamp)
- FullRestoration()
- FullRestoration
- fullRestorationForMeasuredPointSpreadFunctionString($source, $dest)
- fullRestorationString($source, $dest, $brMode)
- genPreview($file, $src, $dest, $index, $sizes = "preview", $data = 0)
- geometriesWith($isThreeDimensional, $isTimeSeries)
- get_rand_id($length)
- getAberractionCorrectionParameters()
- getAcceptedStatus()
- getAdminName()
- getAllDescriptiveNames()
- getCompoundJobs()
- getCompressedArchiveType($filename)
- getContents()
- getCreditsFor($owner)
- getDateFilter($fromDate, $toDate)
- getDBCurrentRevision()
- getDBLastRevision()
- getDestFiles()
- getDestFilesFrom($startDir, $prefix)
- getEmptyParameterList($parameterSetting)
- getFiles()
- getFilesFrom($startDir, $prefix)
- getFreeServer()
- getFromDates()
- getGroup($userName)
- getGroup($uid)
- getGroup($username)
- getGroupFilter($admin, $group)
- getGroupNames()
- getHRMVersion()
- getHuCoreVersion()
- getHucoreVersionAsInteger($hucoreVersion)
- getImageAction($file, $index, $dir, $type, $ref = 0, $data = 1)
- getImageOptionLine($file, $index, $dir, $type, $ref = 0, $data = 1)
- getJobFilesFor($id)
- getJobFilesFor($id)
- getJobIdsToKill()
- getJobOwner($id)
- getMarkedJobIds()
- getMaxFileSize()
- getMaxPostSize()
- getMaxSingleUploadSize()
- getMetaData($type = "ics", $file = "all")
- getMovie($file, $dir = "dest")
- getNextIdFromQueue()
- getNextJobDescription()
- getNumberOfOperations()
- getParamAsChannelTclList($setting, $param, $translate = false, $withQuotes = false)
- getParamAsTclList($setting, $param, $withQuotes = false)
- getPieChart($db, $variable, $group, $dateFilter, $groupFilter, $userNameFilter)
- getQueueContents()
- getQueueContentsForId($id)
- getQueueJobs()
- getRunningJobs()
- getSelectedStatistics()
- getStatistics()
- getStatisticsScript($db, $admin, $fromDate, $toDate, $group, $username)
- getSubImages($files)
- getSuspendedStatus()
- getSwitchStatus()
- getTable($db, $statsType, $group, $dateFilter, $groupFilter, $userNameFilter)
- getThisPageName()
- getThumbnail($file, $dir)
- getToDates()
- getTotalRunTimePerGroupTable($db, $statsType, $group, $dateFilter, $groupFilter, $userNameFilter)
- getTotalRunTimePerUserTable($db, $statsType, $group, $dateFilter, $groupFilter, $userNameFilter)
- getUsernameFilter($admin, $username)
- getUserStatus($name)
- getValidArchiveTypesAsString()
- group()
- group()
- groupsOf($creditOwner)
- hasAdaptedParameters()
- HasAdaptedValues()
- HasAdaptedValues
- hasSelection()
- host()
- host()
- HRM_VERSION
- huCoreTools($tool, $options)
- huscriptPathOn($host)
- id()
- id()
- id()
- idealSampleSizeZ()
- idealSampleSizeZFor($channel)
- imageExtensions()
- ImageFileFormat()
- ImageFileFormat
- ImageGeometry()
- ImageGeometry
- imageParameterNames()
- imgCompareMode($image, $dir, $type)
- imgPreview($image, $dir, $type = "preview_xy", $escape = true)
- imgPreviewMode($image, $dir, $type)
- incNPing($name)
- internalPossibleValues()
- internalPossibleValues()
- internalValue()
- internalValue()
- internalValue()
- isAdmin()
- isAdmin()
- isBoolean()
- isBoolean()
- isCompound()
- isConnected()
- isDatabaseUpdated()
- isDBUpToDate()
- isDefault()
- isFixedGeometryFormat()
- isForCapture()
- isForCapture()
- isForCapture()
- isForCapture()
- isForCapture()
- isForCapture()
- isForCapture()
- isForImage()
- isForImage()
- isForImage()
- isForImage()
- isForImage()
- isForImage()
- isForImage()
- isForImage()
- isForImage()
- isForImage()
- isForMicroscope()
- isForMicroscope()
- isForMicroscope()
- isForMicroscope()
- isForMicroscope()
- isForMicroscope()
- isForMicroscope()
- isForMicroscope()
- isForMicroscope()
- isForMicroscope()
- isGraph()
- isGraph()
- isHuygensProcessSleeping($pid)
- isHuygensProcessSleeping($pid)
- isImage($filename)
- isJobWithPidRunning($pid)
- isJobWithPidRunning($pid)
- isLocked()
- isLoggedIn()
- isLoginRestrictedToAdmin()
- isMultiChannel()
- IsMultiChannel
- IsMultiChannel()
- isMultiChannel()
- isMultiPointConfocal()
- isMultiPointOrSinglePointConfocal()
- isNipkowDisk()
- isNyquistRateOK()
- isOutputIms()
- isRangeParameter()
- isRangeParameter()
- isRangeParameter()
- isRangeParameter()
- isReachable()
- isReachable()
- isReachable()
- isServerBusy($name)
- isServerBusy($name)
- isSingleChannel()
- isSinglePointConfocal()
- isStatusAccepted()
- isStepCombinedProcessing()
- isStepProcessing()
- isSubgroupOf($credit)
- isSuspended()
- isSwitchOn()
- isThreeDimensional()
- isTif()
- isTimeSeries()
- isTrue()
- isTwoPhoton()
- isTwoPhotonOrSinglePoint()
- isValidImage($filename, $alsoExtras = false)
- isVariableChannel()
- isVariableChannel()
- isVariableChannelFormat()
- isWidefield()
- isWidefieldOrMultiPoint()
- Job($jobDescription)
- Job
- JobDescription
- JobDescription()
- JobParameterSetting
- JobQueue
- JobQueue()
- JobTaskSetting
- killHucoreProcess($pid)
- killHucoreProcess($pid)
- killJobs($ids)
- killMarkedJobs()
- lastError()
- Ldap
- ldap_encrypt($string, $dbPasswordType, $dbPassword)
- leicaStyleNumberingBasename($filename)
- lensRefractiveIndexString()
- let_to_num($v)
- listFilesFrom($startDir, $prefix, $extension)
- load()
- load()
- load()
- load()
- loadAccountingData($jobDescription)
- loadCreditOwner($id)
- loadCreditOwnerFromUserTableQueryString($id)
- loadGroupQueryString($id)
- loadImageString($isOriginal = false)
- loadParameterSettings($aSetting)
- loadSelectedSetting()
- LocalExternalProcess
- LocalExternalProcess($host, $huscript_path, $logfileName, $errfileName)
- lock()
- logIn($name, $password, $ip)
- logOut()
- Mail
- makeSelectedSettingDefault()
- makeWithdrawal($user, $client, $startTime, $stopTime, $credit, $group)
- markJobAsRemoved($id)
- markJobsAsRemoved($ids, $owner)
- markServerAsFree($server)
- max()
- maxIterationsString()
- mediumRefractiveIndexString()
- message()
- message()
- message()
- microscopeParameterNames()
- microscopeParameterString()
- MicroscopeType
- MicroscopeType()
- microscopeTypeString()
- min()
- multiChannelFileFormats()
- MultiChannelOutput
- MultiChannelOutput()
- multiChannelParameterString($name, $command)
- mustReplaceSourceName()
- myGroups()
- myGroupsForCredit($credit)
- name()
- name()
- name()
- name()
- name()
- newExternalProcess($host, $logfilename, $errfilename)
- newExternalProcessFor($host, $logfilename, $errfilename)
- newNameForSingleTif()
- newSettingObject()
- newSettingObject()
- nextJobFromQueue()
- noiseLevelString()
- notifyError($job, $message, $startTime)
- notifyPingError($name)
- notifyRuntimeError($subject, $message)
- notifySuccess($job, $startTime)
- notifyWarning($job, $message, $startTime)
- now()
- numberOfChannels()
- numberOfChannels()
- numberOfChannels()
- NumberOfChannels
- NumberOfChannels()
- NumberOfIterations
- NumberOfIterations()
- NumberOfIterationsRange()
- NumberOfIterationsRange
- NumberOfIterationsUseRange
- NumberOfIterationsUseRange()
- numberOfValues()
- NumericalAperture
- NumericalAperture()
- numericalApertureString()
- NumericalParameter($name)
- NumericalParameter
- ObjectiveMagnification()
- ObjectiveMagnification
- ObjectiveType
- ObjectiveType()
- originalSampleSizesString()
- OutputFileFormat()
- OutputFileFormat
- owner()
- owner()
- Owner
- Owner()
- Parameter
- Parameter($name)
- parameter($name)
- parameterNames()
- parameterSetting()
- ParameterSetting()
- ParameterSetting
- parameterTable()
- parameterTable()
- parameterTable()
- parameterTable()
- parameterText($job)
- parse_ldap_password($dbPassword)
- password()
- password($name, $password)
- password()
- passwordQueryString($name)
- pauseJob($jobDescription)
- pauseJob($id)
- PerformAberrationCorrection
- PerformAberrationCorrection()
- photonCountString()
- pid()
- pid()
- pidFromString($input)
- ping()
- ping()
- pinholeRadiusString()
- PinholeSize
- PinholeSize()
- PinholeSpacing()
- PinholeSpacing
- pinholeSpacingString()
- pixelSize()
- PointSpreadFunction()
- PointSpreadFunction
- positiveCredits()
- positiveCreditsNames()
- possibleValues()
- possibleValuesString()
- prefix()
- previewPage($file, $op = "close", $mode = "MIP", $size = 400)
- printCheckBox($customHTML)
- printCheckBox($valueChecked, $customHTML)
- printDebug()
- printHRMVersion()
- printRadioButtonForValue($value, $customHTML)
- printRadioButtons()
- printRadioButtonsEmbeddedIn($htmlPrefix, $htmlPostfix)
- printSingleLineRadioButtons()
- processCompoundJobs()
- PSF()
- PSF
- psfComputationString($source, $constant = 0, $position = 0)
- PSFGenerationDepth
- PSFGenerationDepth()
- putMultiChannelScriptOn($script, $isOriginal = false)
- putScriptForMeasuredPointSpreadFunctionOn($script)
- putScriptOn($script)
- putScriptOn($script, $isOriginal = false)
- putScriptOn($script, $corrParams)
- putScriptOnForChannel($script, $channel)
- QualityChangeStoppingCriterion
- QualityChangeStoppingCriterion()
- query($queryString)
- queryLastRow($queryString)
- queryLastValue($queryString)
- queueJob($id, $username)
- queueJob($jobDescription)
- QueueManager()
- QueueManager
- rangeParameter()
- rangeParameter()
- rangeParameterCombinations($rangeParameter)
- rangeParameterNames()
- read()
- readfile_chunked($filename, $retbytes = true)
- readHuCoreVersion()
- readNumericalValueRestrictions($parameter)
- readPossibleValues($parameter)
- readTranslatedPossibleValues($parameter)
- realParameterName()
- realParameterName()
- realParameterName()
- relativeSourcePath()
- release()
- relocateOldPreview($dir, $entry)
- remainingHoursForHrmString()
- remainingHoursString()
- remainingHoursStringFor($credit)
- RemoveBackground
- RemoveBackground()
- RemoveBackgroundPercent
- RemoveBackgroundPercent()
- removeBackgroundPercentString()
- removeFilesFromSelection($files)
- removeJob($jobDescription)
- removeJobWithId($id)
- removeMarkedJobs()
- RemoveNoise()
- RemoveNoise
- RemoveNoiseEffectiveness
- RemoveNoiseEffectiveness()
- report($text, $level)
- reserveServer($name, $pid)
- reset()
- resetDefault()
- resetServer($name, $pid)
- restartPausedJobs()
- restartPausedJobs()
- restoreOwnership($username)
- retrieveColumnFromTableWhere($column, $table, $conditions)
- rewakeHuygensProcess($pid)
- rewakeHuygensProcess($pid)
- run()
- runHuygensScript($scriptName)
- runningJobs()
- runShell()
- runShell()
- SampleMedium
- SampleMedium()
- sampleSize($size)
- sampleSizeAdaptionFactor()
- sampleSizesString()
- sampleSizeT()
- sampleSizeX()
- sampleSizeY()
- sampleSizeZ()
- save()
- saveAccountingData($id, $credit, $group)
- saveImageString($isResult = false)
- saveJobFiles($id, $owner, $files)
- saveParameterSettings($settings)
- script()
- scriptName()
- selected()
- selectedFiles()
- send()
- server()
- set()
- set($parameter)
- setAdaptedParameters($value)
- setCredit($credit)
- setCredit($amount)
- setDefaultImageExtensions()
- setDefaultStats()
- setEmail($email)
- setFiles($files)
- setFromDateFilter($fromDate)
- setGroup($group)
- setGroup($group)
- setGroupFilter($group)
- setHuCoreVersion($value)
- setId($anId)
- setImageExtensions($extensions)
- setJobEndTime($id, $date)
- setJobPriorities()
- setMax($value)
- setMessage($message)
- setMin($value)
- setName($name)
- setName($name)
- setNumberOfChannels($number)
- setNumberOfChannels($channels)
- setOwner($owner)
- setOwner($owner)
- setParameterSetting($setting)
- setPid($pid)
- setPossibleValues($values)
- setReceiver($receiver)
- setSelected($name)
- setSelectedStatistics($descriptiveName)
- setServer($server)
- setStatus($status)
- setSubject($subject)
- setSwitchStatus($status)
- setTaskSetting($setting)
- Setting
- Setting()
- setting($name)
- SettingEditor($user)
- SettingEditor
- settings()
- settingsQueryString($name, $table)
- setToDateFilter($toDate)
- setupAllowedValues($db)
- setupAllowedValues($db)
- setupAllowedValues($db)
- setupAllowedValues($db)
- setupAllowedValues($db)
- setupAllowedValues($db)
- setupAllowedValues($db)
- setValue($value)
- setValue($value)
- setValue($value)
- setValue($value)
- setValue($value)
- setValue($value)
- setValue($value)
- setValue($value)
- shallStop()
- SignalNoiseRatio()
- SignalNoiseRatio
- SignalNoiseRatioRange()
- SignalNoiseRatioRange
- signalNoiseRatioString()
- SignalNoiseRatioUseRange
- SignalNoiseRatioUseRange()
- singleChannelFileFormats()
- SingleOrMultiChannelParameter
- sourceFolder()
- sourceFolder()
- sourceForStep($stepNumber)
- sourceImageName()
- sourceImageNameWithoutPath()
- sourceImageShortName()
- startJob($job)
- startJob($job)
- startTime($job)
- startTimeOf($job)
- Stats
- status()
- statusOfServer($name)
- stkFiles()
- stkSeriesBasename($filename)
- stkSeriesFiles()
- stop()
- stopJob($job)
- StyleOfProcessing
- StyleOfProcessing()
- superGroupsOfQueryString($id)
- table()
- table()
- table()
- table()
- table()
- table()
- tariffAndCategoryFromResourceQueryString($id)
- tariffForResource($id)
- tariffFromResourceCategoryQueryString($id)
- taskSetting()
- TaskSetting()
- TaskSetting
- TaskSettingEditor
- threeDimensionalGeometries()
- tiffFiles()
- tiffLeicaFiles()
- tiffSeriesFiles()
- TimeInterval
- TimeInterval()
- timeSeriesGeometries()
- timestampNowString()
- translatedValue()
- translatedValue()
- translatedValue()
- translatedValue()
- translatedValue()
- translation($name, $value)
- translationFor($parameter)
- trimStk()
- trimStkSeries()
- trimTiff()
- trimTiffLeica()
- trimTiffSeries()
- TubeFactor
- TubeFactor()
- type()
- Type
- type()
- unlock()
- updateAvailableDestFiles()
- updateAvailableFiles()
- updateDefault($settings)
- updateEstimatedEndTime($id, $date)
- updateJobAndServerStatus()
- updateLastAccessDate()
- updateLastAccessDate($userName)
- updateMail($userName, $email)
- updateStatistics($job, $startTime)
- uploadFiles($files, $dir)
- useParameterName()
- useParameterName()
- useParameterName()
- User()
- user()
- user()
- user()
- User
- userGroup()
- username()
- userWhoCreatedJob($id)
- usesCCDCamera()
- usesPhotomultiplier()
- value()
- value()
- values($name)
- variableChannelFileFormats()
- VariableChannelsParameter
- VariableChannelsParameter($name)
- Versions
- viewStrip($file, $type = "stack.comparison", $dir = "dest", $frame = false, $margin = 25)
- waitForDatabaseConnection()
- writeParameterFile($job, $startTime, $logFile, $errorFile)
- writeScript()
- ZStepSize
- ZStepSize()