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Index

• $authMode
• $checkMax
• $checkMin
• $connection
• $connection
• $credit
• $credit
• $descriptorSpec
• $email
• $expandSubImages
• $files
• $files
• $freeServer
• $group
• $group
• $host
• $huscript_path
• $id
• $id
• $id
• $imageExtensions
• $ip
• $isDefault
• $isLoggedIn
• $isMaxIncluded
• $isMinIncluded
• $isMultiChannel
• $job
• $jobDescription
• $lastActivity
• $logfileName
• $m_AdLDAP
• $m_AdminOnly
• $m_DB
• $m_DescriptiveName
• $m_Filter_FromDate
• $m_Filter_Group
• $m_Filter_ToDate
• $m_GroupIndex
• $m_Name
• $m_Selected_Statistics
• $m_Stats_Array
• $m_Type
• $m_Username
• $m_ValidGroups
• $m_Variable
• $max
• $message
• $message
• $message
• $message
• $min
• $multiImageExtensions
• $name
• $name
• $name
• $nping
• $numberOfChannels
• $numberOfChannels
• $out_file
• $owner
• $owner
• $parameter
• $parameterSetting
• $pass
• $pid
• $pid
• $pipes
• $possibleValues
• $queue
• $receiver
• $script
• $selected
• $selectedFiles
• $sender
• $server
• $shallStop
• $shell
• $status
• $stopTime
• $subject
• $taskSetting
• $user
• $username
• $validArchiveExtensions
• $validImageExtensions
• $validImageExtensionsExtras
• $value
• __construct($username)
• __construct($sender)
• __construct()
• __construct($name, $variable, $descriptiveName, $type, $adminOnly)
• __construct()
• __destruct()
• AberrationCorrectionMode()
• AberrationCorrectionMode
• AberrationCorrectionNecessary()
• AberrationCorrectionNecessary
• AccountingDatabaseConnection()
• AccountingDatabaseConnection
• ActiveDirectory
• adaptedLateralSampleSize()
• adaptedLateralSampleSizeFor($size)
• addAllCreditsFor($credits)
• addFilesToSelection($files)
• addJob()
• AdvancedCorrectionOptions
• AdvancedCorrectionOptions()
• allFiles()
• appendScriptParameters()
• askHuCore($tool, $options = "")
• assign_rand_value($num)
• authenticate($uid, $userPassword)
• authenticate($username, $password)
• availableServer()
• availableServer()
• BackgroundOffsetPercent
• BackgroundOffsetPercent()
• BackgroundOffsetRange()
• BackgroundOffsetRange
• BackgroundOffsetUseRange()
• BackgroundOffsetUseRange
• backgroundPerChannelString()
• basename($filename)
• beDefault()
• beMultiChannel()
• beSingleChannel()
• bindManager()
• Binning
• Binning()
• BooleanParameter($name)
• BooleanParameter
• calculateNyquistRate()
• captorSizeText()
• capturingParameterNames()
• CCDCaptorSizeX
• CCDCaptorSizeX()
• check()
• check()
• check()
• checkCalculateParameter()
• checkCapturingParameter()
• checkChoiceValue($name, $label)
• checkGeometry($prefix)
• checkImageParameter()
• checkLogin($name, $password)
• checkLoginAgainstACTIVEDIR($name, $password)
• checkLoginAgainstHRMDatabase($name, $password)
• checkLoginAgainstLDAP($name, $password)
• checkMax()
• checkMicroscopeParameter()
• checkMin()
• checkMultiChannelImageParameter()
• checkNewSettingName($name)
• checkNumberOfChannels()
• checkNumericalAperture()
• checkNumericalValue($name, $label)
• checkNumericalValues($name, $label, $numberOfChannels)
• checkNyquistRate()
• checkParameter()
• checkPinholeSize()
• checkPinholeSpacing()
• checkPointSpreadFunction()
• checkProcessFinished()
• checkRange($parameterName, $originalLabel)
• checkResultImage()
• checkSampleMedium()
• checkSelectedSetting()
• checkSignalNoiseRatio()
• checkSingleChannelImageParameter()
• checkUser($name)
• checkValue($value)
• checkValue($value)
• checkValue($value)
• checkValue($value)
• checkWavelength($name)
• ChoiceParameter($name)
• ChoiceParameter
• cleanNonImages($startDir, $prefix, &$valid, &$msg)
• cleanUpFileServer($job)
• CMount()
• CMount
• combine($firstArray, $secondArray)
• combineAll($anArray)
• compareResult($file, $size = "400", $op = "close", $mode = "MIP")
• condenseStkSeries()
• condenseTiffLeica()
• condenseTimeSeries()
• connection()
• copyFrom($aJobDescription)
• copyImagesToServer($job, $server_hostname)
• copyParameterFrom($setting)
• copyPublicSetting($setting)
• copySelectedSetting($newName)
• CoverslipRelativePosition()
• CoverslipRelativePosition
• createJob()
• createNewSetting($name)
• createScript()
• createScriptVersionOne()
• createScriptVersionZero()
• createSubJobs()
• createSubJobsforFiles()
• createSubJobsOrScript()
• credit()
• credit()
• CreditOwner($id)
• CreditOwner
• credits()
• DatabaseConnection()
• DatabaseConnection
• DB_LAST_REVISION
• decAlgorithmString()
• decompressArchive($file, $type, $dest, &$okMsg, &$errMsg, $subdir = "", $imagesOnly = true)
• DeconvolutionAlgorithm
• DeconvolutionAlgorithm()
• defaultSettingName()
• defaultValue($parameterName)
• deleteFiles($files, $dir = "dest")
• deleteFromTablesWhereColumnEquals($tables, $columns, $id)
• deleteSelectedSetting()
• deleteSetting($settings)
• description()
• destFiles()
• destinationFolder()
• destinationFolder()
• destinationFolderFor($desc)
• destinationFolderTop()
• destinationForStep($stepNumber)
• destinationImageFullName()
• destinationImageName()
• destinationImageNameAndExtension()
• destinationImageNameWithoutPath()
• destroyImageString($imageName)
• display()
• display()
• displayCMLEString($numberOfChannels = 0)
• displayQMLEString($numberOfChannels = 0)
• displayString($numberOfChannels = 0)
• displayString()
• displayString($numberOfChannels = 0)
• displayString()
• displayString()
• displayString()
• displayString()
• displayStringWithoutOutputFileFormat($numberOfChannels = 0)
• displayWithoutOutputFileFormat($numberOfChannels = 0)
• downloadResults($files)
• dumpStatsTableToFile()
• email()
• emailAddress()
• emailAddress($uid)
• emailAddress($username)
• emailAddress($username)
• emailAddressFromReservationSystem($name)
• EmissionWavelength
• EmissionWavelength()
• emissionWavelengthsString()
• encrypt($string, $seed)
• endsWithNumber($string)
• errorOccured($job)
• escapeJavaScript($str)
• ExcitationWavelength()
• ExcitationWavelength
• excitationWavelengthsString()
• execute($query)
• execute($command)
• execute($command)
• executeScript($job)
• exists()
• existsHuygensProcess($pid)
• existsHuygensProcess($pid)
• existsParametersFor($settings)
• existsSetting($settings)
• expandSubImages($value)
• extension()
• ExternalProcess($host, $huscript_path, $logfileName, $errfileName)
• ExternalProcess
• fileButton($type)
• fileExtensions()
• fileExtensions($imageFormat)
• fileFormatsWith($isSingleChannel, $isVariableChannel, $isFixedGeometry)
• files()
• files()
• Fileserver
• Fileserver($name)
• filesOfType($format)
• fillStatsArray()
• findStrip($file, $type, $dir)
• fixedGeometryFileFormats()
• flatten($anArray)
• folderContains($folder, $string)
• folderContainsNewerFile($folder, $date)
• freeServer()
• fromUnixTime($timestamp)
• FullRestoration()
• FullRestoration
• fullRestorationForMeasuredPointSpreadFunctionString($source, $dest)
• fullRestorationString($source, $dest, $brMode)
• genPreview($file, $src, $dest, $index, $sizes = "preview", $data = 0)
• geometriesWith($isThreeDimensional, $isTimeSeries)
• get_rand_id($length)
• getAberractionCorrectionParameters()
• getAcceptedStatus()
• getAdminName()
• getAllDescriptiveNames()
• getCompoundJobs()
• getCompressedArchiveType($filename)
• getContents()
• getCreditsFor($owner)
• getDateFilter($fromDate, $toDate)
• getDBCurrentRevision()
• getDBLastRevision()
• getDestFiles()
• getDestFilesFrom($startDir, $prefix)
• getEmptyParameterList($parameterSetting)
• getFiles()
• getFilesFrom($startDir, $prefix)
• getFreeServer()
• getFromDates()
• getGroup($userName)
• getGroup($uid)
• getGroup($username)
• getGroupFilter($admin, $group)
• getGroupNames()
• getHRMVersion()
• getHuCoreVersion()
• getHucoreVersionAsInteger($hucoreVersion)
• getImageAction($file, $index, $dir, $type, $ref = 0, $data = 1)
• getImageOptionLine($file, $index, $dir, $type, $ref = 0, $data = 1)
• getJobFilesFor($id)
• getJobFilesFor($id)
• getJobIdsToKill()
• getJobOwner($id)
• getMarkedJobIds()
• getMaxFileSize()
• getMaxPostSize()
• getMaxSingleUploadSize()
• getMetaData($type = "ics", $file = "all")
• getMovie($file, $dir = "dest")
• getNextIdFromQueue()
• getNextJobDescription()
• getNumberOfOperations()
• getParamAsChannelTclList($setting, $param, $translate = false, $withQuotes = false)
• getParamAsTclList($setting, $param, $withQuotes = false)
• getPieChart($db, $variable, $group, $dateFilter, $groupFilter, $userNameFilter)
• getQueueContents()
• getQueueContentsForId($id)
• getQueueJobs()
• getRunningJobs()
• getSelectedStatistics()
• getStatistics()
• getStatisticsScript($db, $admin, $fromDate, $toDate, $group, $username)
• getSubImages($files)
• getSuspendedStatus()
• getSwitchStatus()
• getTable($db, $statsType, $group, $dateFilter, $groupFilter, $userNameFilter)
• getThisPageName()
• getThumbnail($file, $dir)
• getToDates()
• getTotalRunTimePerGroupTable($db, $statsType, $group, $dateFilter, $groupFilter, $userNameFilter)
• getTotalRunTimePerUserTable($db, $statsType, $group, $dateFilter, $groupFilter, $userNameFilter)
• getUsernameFilter($admin, $username)
• getUserStatus($name)
• getValidArchiveTypesAsString()
• group()
• group()
• groupsOf($creditOwner)
• hasAdaptedParameters()
• HasAdaptedValues()
• HasAdaptedValues
• hasSelection()
• host()
• host()
• HRM_VERSION
• huCoreTools($tool, $options)
• huscriptPathOn($host)
• id()
• id()
• id()
• idealSampleSizeZ()
• idealSampleSizeZFor($channel)
• imageExtensions()
• ImageFileFormat()
• ImageFileFormat
• ImageGeometry()
• ImageGeometry
• imageParameterNames()
• imgCompareMode($image, $dir, $type)
• imgPreview($image, $dir, $type = "preview_xy", $escape = true)
• imgPreviewMode($image, $dir, $type)
• incNPing($name)
• internalPossibleValues()
• internalPossibleValues()
• internalValue()
• internalValue()
• internalValue()
• isAdmin()
• isAdmin()
• isBoolean()
• isBoolean()
• isCompound()
• isConnected()
• isDatabaseUpdated()
• isDBUpToDate()
• isDefault()
• isFixedGeometryFormat()
• isForCapture()
• isForCapture()
• isForCapture()
• isForCapture()
• isForCapture()
• isForCapture()
• isForCapture()
• isForImage()
• isForImage()
• isForImage()
• isForImage()
• isForImage()
• isForImage()
• isForImage()
• isForImage()
• isForImage()
• isForImage()
• isForMicroscope()
• isForMicroscope()
• isForMicroscope()
• isForMicroscope()
• isForMicroscope()
• isForMicroscope()
• isForMicroscope()
• isForMicroscope()
• isForMicroscope()
• isForMicroscope()
• isGraph()
• isGraph()
• isHuygensProcessSleeping($pid)
• isHuygensProcessSleeping($pid)
• isImage($filename)
• isJobWithPidRunning($pid)
• isJobWithPidRunning($pid)
• isLocked()
• isLoggedIn()
• isLoginRestrictedToAdmin()
• isMultiChannel()
• IsMultiChannel
• IsMultiChannel()
• isMultiChannel()
• isMultiPointConfocal()
• isMultiPointOrSinglePointConfocal()
• isNipkowDisk()
• isNyquistRateOK()
• isOutputIms()
• isRangeParameter()
• isRangeParameter()
• isRangeParameter()
• isRangeParameter()
• isReachable()
• isReachable()
• isReachable()
• isServerBusy($name)
• isServerBusy($name)
• isSingleChannel()
• isSinglePointConfocal()
• isStatusAccepted()
• isStepCombinedProcessing()
• isStepProcessing()
• isSubgroupOf($credit)
• isSuspended()
• isSwitchOn()
• isThreeDimensional()
• isTif()
• isTimeSeries()
• isTrue()
• isTwoPhoton()
• isTwoPhotonOrSinglePoint()
• isValidImage($filename, $alsoExtras = false)
• isVariableChannel()
• isVariableChannel()
• isVariableChannelFormat()
• isWidefield()
• isWidefieldOrMultiPoint()
• Job($jobDescription)
• Job
• JobDescription
• JobDescription()
• JobParameterSetting
• JobQueue
• JobQueue()
• JobTaskSetting
• killHucoreProcess($pid)
• killHucoreProcess($pid)
• killJobs($ids)
• killMarkedJobs()
• lastError()
• Ldap
• ldap_encrypt($string, $dbPasswordType, $dbPassword)
• leicaStyleNumberingBasename($filename)
• lensRefractiveIndexString()
• let_to_num($v)
• listFilesFrom($startDir, $prefix, $extension)
• load()
• load()
• load()
• load()
• loadAccountingData($jobDescription)
• loadCreditOwner($id)
• loadCreditOwnerFromUserTableQueryString($id)
• loadGroupQueryString($id)
• loadImageString($isOriginal = false)
• loadParameterSettings($aSetting)
• loadSelectedSetting()
• LocalExternalProcess
• LocalExternalProcess($host, $huscript_path, $logfileName, $errfileName)
• lock()
• logIn($name, $password, $ip)
• logOut()
• Mail
• makeSelectedSettingDefault()
• makeWithdrawal($user, $client, $startTime, $stopTime, $credit, $group)
• markJobAsRemoved($id)
• markJobsAsRemoved($ids, $owner)
• markServerAsFree($server)
• max()
• maxIterationsString()
• mediumRefractiveIndexString()
• message()
• message()
• message()
• microscopeParameterNames()
• microscopeParameterString()
• MicroscopeType
• MicroscopeType()
• microscopeTypeString()
• min()
• multiChannelFileFormats()
• MultiChannelOutput
• MultiChannelOutput()
• multiChannelParameterString($name, $command)
• mustReplaceSourceName()
• myGroups()
• myGroupsForCredit($credit)
• name()
• name()
• name()
• name()
• name()
• newExternalProcess($host, $logfilename, $errfilename)
• newExternalProcessFor($host, $logfilename, $errfilename)
• newNameForSingleTif()
• newSettingObject()
• newSettingObject()
• nextJobFromQueue()
• noiseLevelString()
• notifyError($job, $message, $startTime)
• notifyPingError($name)
• notifyRuntimeError($subject, $message)
• notifySuccess($job, $startTime)
• notifyWarning($job, $message, $startTime)
• now()
• numberOfChannels()
• numberOfChannels()
• numberOfChannels()
• NumberOfChannels
• NumberOfChannels()
• NumberOfIterations
• NumberOfIterations()
• NumberOfIterationsRange()
• NumberOfIterationsRange
• NumberOfIterationsUseRange
• NumberOfIterationsUseRange()
• numberOfValues()
• NumericalAperture
• NumericalAperture()
• numericalApertureString()
• NumericalParameter($name)
• NumericalParameter
• ObjectiveMagnification()
• ObjectiveMagnification
• ObjectiveType
• ObjectiveType()
• originalSampleSizesString()
• OutputFileFormat()
• OutputFileFormat
• owner()
• owner()
• Owner
• Owner()
• Parameter
• Parameter($name)
• parameter($name)
• parameterNames()
• parameterSetting()
• ParameterSetting()
• ParameterSetting
• parameterTable()
• parameterTable()
• parameterTable()
• parameterTable()
• parameterText($job)
• parse_ldap_password($dbPassword)
• password()
• password($name, $password)
• password()
• passwordQueryString($name)
• pauseJob($jobDescription)
• pauseJob($id)
• PerformAberrationCorrection
• PerformAberrationCorrection()
• photonCountString()
• pid()
• pid()
• pidFromString($input)
• ping()
• ping()
• pinholeRadiusString()
• PinholeSize
• PinholeSize()
• PinholeSpacing()
• PinholeSpacing
• pinholeSpacingString()
• pixelSize()
• PointSpreadFunction()
• PointSpreadFunction
• positiveCredits()
• positiveCreditsNames()
• possibleValues()
• possibleValuesString()
• prefix()
• previewPage($file, $op = "close", $mode = "MIP", $size = 400)
• printCheckBox($customHTML)
• printCheckBox($valueChecked, $customHTML)
• printDebug()
• printHRMVersion()
• printRadioButtonForValue($value, $customHTML)
• printRadioButtons()
• printRadioButtonsEmbeddedIn($htmlPrefix, $htmlPostfix)
• printSingleLineRadioButtons()
• processCompoundJobs()
• PSF()
• PSF
• psfComputationString($source, $constant = 0, $position = 0)
• PSFGenerationDepth
• PSFGenerationDepth()
• putMultiChannelScriptOn($script, $isOriginal = false)
• putScriptForMeasuredPointSpreadFunctionOn($script)
• putScriptOn($script)
• putScriptOn($script, $isOriginal = false)
• putScriptOn($script, $corrParams)
• putScriptOnForChannel($script, $channel)
• QualityChangeStoppingCriterion
• QualityChangeStoppingCriterion()
• query($queryString)
• queryLastRow($queryString)
• queryLastValue($queryString)
• queueJob($id, $username)
• queueJob($jobDescription)
• QueueManager()
• QueueManager
• rangeParameter()
• rangeParameter()
• rangeParameterCombinations($rangeParameter)
• rangeParameterNames()
• read()
• readfile_chunked($filename, $retbytes = true)
• readHuCoreVersion()
• readNumericalValueRestrictions($parameter)
• readPossibleValues($parameter)
• readTranslatedPossibleValues($parameter)
• realParameterName()
• realParameterName()
• realParameterName()
• relativeSourcePath()
• release()
• relocateOldPreview($dir, $entry)
• remainingHoursForHrmString()
• remainingHoursString()
• remainingHoursStringFor($credit)
• RemoveBackground
• RemoveBackground()
• RemoveBackgroundPercent
• RemoveBackgroundPercent()
• removeBackgroundPercentString()
• removeFilesFromSelection($files)
• removeJob($jobDescription)
• removeJobWithId($id)
• removeMarkedJobs()
• RemoveNoise()
• RemoveNoise
• RemoveNoiseEffectiveness
• RemoveNoiseEffectiveness()
• report($text, $level)
• reserveServer($name, $pid)
• reset()
• resetDefault()
• resetServer($name, $pid)
• restartPausedJobs()
• restartPausedJobs()
• restoreOwnership($username)
• retrieveColumnFromTableWhere($column, $table, $conditions)
• rewakeHuygensProcess($pid)
• rewakeHuygensProcess($pid)
• run()
• runHuygensScript($scriptName)
• runningJobs()
• runShell()
• runShell()
• SampleMedium
• SampleMedium()
• sampleSize($size)
• sampleSizeAdaptionFactor()
• sampleSizesString()
• sampleSizeT()
• sampleSizeX()
• sampleSizeY()
• sampleSizeZ()
• save()
• saveAccountingData($id, $credit, $group)
• saveImageString($isResult = false)
• saveJobFiles($id, $owner, $files)
• saveParameterSettings($settings)
• script()
• scriptName()
• selected()
• selectedFiles()
• send()
• server()
• set()
• set($parameter)
• setAdaptedParameters($value)
• setCredit($credit)
• setCredit($amount)
• setDefaultImageExtensions()
• setDefaultStats()
• setEmail($email)
• setFiles($files)
• setFromDateFilter($fromDate)
• setGroup($group)
• setGroup($group)
• setGroupFilter($group)
• setHuCoreVersion($value)
• setId($anId)
• setImageExtensions($extensions)
• setJobEndTime($id, $date)
• setJobPriorities()
• setMax($value)
• setMessage($message)
• setMin($value)
• setName($name)
• setName($name)
• setNumberOfChannels($number)
• setNumberOfChannels($channels)
• setOwner($owner)
• setOwner($owner)
• setParameterSetting($setting)
• setPid($pid)
• setPossibleValues($values)
• setReceiver($receiver)
• setSelected($name)
• setSelectedStatistics($descriptiveName)
• setServer($server)
• setStatus($status)
• setSubject($subject)
• setSwitchStatus($status)
• setTaskSetting($setting)
• Setting
• Setting()
• setting($name)
• SettingEditor($user)
• SettingEditor
• settings()
• settingsQueryString($name, $table)
• setToDateFilter($toDate)
• setupAllowedValues($db)
• setupAllowedValues($db)
• setupAllowedValues($db)
• setupAllowedValues($db)
• setupAllowedValues($db)
• setupAllowedValues($db)
• setupAllowedValues($db)
• setValue($value)
• setValue($value)
• setValue($value)
• setValue($value)
• setValue($value)
• setValue($value)
• setValue($value)
• setValue($value)
• shallStop()
• SignalNoiseRatio()
• SignalNoiseRatio
• SignalNoiseRatioRange()
• SignalNoiseRatioRange
• signalNoiseRatioString()
• SignalNoiseRatioUseRange
• SignalNoiseRatioUseRange()
• singleChannelFileFormats()
• SingleOrMultiChannelParameter
• sourceFolder()
• sourceFolder()
• sourceForStep($stepNumber)
• sourceImageName()
• sourceImageNameWithoutPath()
• sourceImageShortName()
• startJob($job)
• startJob($job)
• startTime($job)
• startTimeOf($job)
• Stats
• status()
• statusOfServer($name)
• stkFiles()
• stkSeriesBasename($filename)
• stkSeriesFiles()
• stop()
• stopJob($job)
• StyleOfProcessing
• StyleOfProcessing()
• superGroupsOfQueryString($id)
• table()
• table()
• table()
• table()
• table()
• table()
• tariffAndCategoryFromResourceQueryString($id)
• tariffForResource($id)
• tariffFromResourceCategoryQueryString($id)
• taskSetting()
• TaskSetting()
• TaskSetting
• TaskSettingEditor
• threeDimensionalGeometries()
• tiffFiles()
• tiffLeicaFiles()
• tiffSeriesFiles()
• TimeInterval
• TimeInterval()
• timeSeriesGeometries()
• timestampNowString()
• translatedValue()
• translatedValue()
• translatedValue()
• translatedValue()
• translatedValue()
• translation($name, $value)
• translationFor($parameter)
• trimStk()
• trimStkSeries()
• trimTiff()
• trimTiffLeica()
• trimTiffSeries()
• TubeFactor
• TubeFactor()
• type()
• Type
• type()
• unlock()
• updateAvailableDestFiles()
• updateAvailableFiles()
• updateDefault($settings)
• updateEstimatedEndTime($id, $date)
• updateJobAndServerStatus()
• updateLastAccessDate()
• updateLastAccessDate($userName)
• updateMail($userName, $email)
• updateStatistics($job, $startTime)
• uploadFiles($files, $dir)
• useParameterName()
• useParameterName()
• useParameterName()
• User()
• user()
• user()
• user()
• User
• userGroup()
• username()
• userWhoCreatedJob($id)
• usesCCDCamera()
• usesPhotomultiplier()
• value()
• value()
• values($name)
• variableChannelFileFormats()
• VariableChannelsParameter
• VariableChannelsParameter($name)
• Versions
• viewStrip($file, $type = "stack.comparison", $dir = "dest", $frame = false, $margin = 25)
• waitForDatabaseConnection()
• writeParameterFile($job, $startTime, $logFile, $errorFile)
• writeScript()
• ZStepSize
• ZStepSize()