Todo
Classes summary
| hrm\param\Autocrop |
Whyt not using a BooleanParameter? |
| hrm\param\base\SingleOrMultiChannelParameter |
Check whether this is still used anywhere. |
| hrm\param\ChromaticAberration |
This did not inherit from any base class. Now it inherits from Parameter. Make sure that it still works as expected! |
| hrm\param\IsMultiChannel |
Is this still in use? |
| hrm\param\PerformAberrationCorrection |
Why not a BooleanParameter? |
| hrm\param\ZStabilization |
Why not a BooleanParameter? |
Methods summary
| hrm\DatabaseConnection | loadParameterSettings() |
Debug the switch blog (possibly buggy!) |
| hrm\DatabaseConnection | loadSharedParameterSettings() |
Debug the second switch block (probably buggy!) |
| hrm\DatabaseConnection | fileFormatsWith() |
Check if this method is still used. |
| hrm\DatabaseConnection | geometriesWith() |
Check if this method is still used. |
| hrm\DatabaseConnection | huscriptPathOn() |
Better management of multiple hosts. |
| hrm\Fileserver | isReachable() |
Test if accessible/writable. |
| hrm\Fileserver | files() |
Do not return different types! |
| hrm\Fileserver | listFiles() |
Refactor! |
| hrm\Fileserver | destFiles() |
Do not return different types! |
| hrm\Fileserver | filesOfType() |
Refactor! |
| hrm\Fileserver | getFilePattern() |
A new design and implementation of the file server is necessary. |
| hrm\Fileserver | downloadResults() |
This will be replaced soon! |
| hrm\Fileserver | uploadFiles() |
This will be replaced soon! |
| hrm\Fileserver | getImageOptionLine() |
Check why this function taks 6 parameters and uses only one. |
| hrm\HuygensTools | askHuCore() |
Do not return different types! |
| hrm\job\Job | checkResultImage() |
Refactor! |
| hrm\job\Job | checkProcessFinished() |
Refactor! |
| hrm\job\JobDescription | load() |
Check that the ParameterSetting->numberOfChannels() exists! |
| hrm\job\JobDescription | sourceImageName() |
Isn't this redundant? One could use the FileServer class! |
| hrm\job\JobDescription | sourceImageNameWithoutPath() |
What about redundant slashes? Isn't this redundant? One could use the FileServer class! |
| hrm\job\JobDescription | relativeSourcePath() |
This must go into the Fileserver class! |
| hrm\job\JobDescription | sourceImageShortName() |
This must go into the Fileserver class! |
| hrm\job\JobDescription | sourceFolder() |
This must go into the Fileserver class! |
| hrm\job\JobDescription | destinationImageName() |
This must go into the Fileserver class! |
| hrm\param\base\NumericalArrayParameter | setValue() |
Notice that right now we do not force the input argument to be an array, since this requires a large refactoring that will be done in a later stage. |
| hrm\param\base\NumericalVectorParameter | check() |
This method calls parent::check() passing one argument, but parent::check() does not take input arguments! |
| hrm\param\ColocCoefficient | setNumberOfChannels() |
This can be dealt with better! |
| hrm\param\OutputFileFormat | extension() |
This information is partially in the database. |
| hrm\QueueManager | removeHuygensOutputFiles() |
Move to Shell.php. |
| hrm\QueueManager | executeTemplate() |
Update templateName variable with templateName |
| hrm\QueueManager | restoreOwnership() |
Is this still used? |
| hrm\QueueManager | updateJobAndServerStatus() |
This method is a mess! |
| hrm\setting\base\SettingEditor | huTemplate2hrmTemplate() |
This method always returns false: it should return true at the end and also interpret the output of the call to HuygensTools::askHuCore() to decide whether it was successful or not! |
| hrm\setting\ParameterSetting | threeDimensionalGeometries() |
Check if this is still in use. |
| hrm\setting\ParameterSetting | timeSeriesGeometries() |
Check if this is still in use. |
| hrm\setting\ParameterSetting | fixedGeometryFileFormats() |
Check if this is still in use. |
| hrm\setting\ParameterSetting | singleChannelFileFormats() |
Check if this is still in use. |
| hrm\setting\ParameterSetting | multiChannelFileFormats() |
Check if this is still in use. |
| hrm\setting\ParameterSetting | variableChannelFileFormats() |
Check if this is still in use. |
| hrm\setting\ParameterSetting | isMultiChannel() |
Check if this is still in use. |
| hrm\setting\ParameterSetting | isVariableChannelFormat() |
Check if this is still in use. |
| hrm\setting\ParameterSetting | isTif() |
Check if this is still in use. |
| hrm\setting\ParameterSetting | pixelSize() |
This is redundant! |
| hrm\setting\ParameterSettingEditor | image2hrmTemplate() |
This method always returns false: it should return true at the end and also interpret the output of the call to HuygensTools::askHuCore() to decide whether it was successful or not! |
| hrm\setting\TaskSetting | isEligibleForCAC() |
Why is this taking a ParameterSetting as an input? |
| hrm\shell\ExternalProcess | rewakeHuygensProcess() |
Replace deprecated split() call. |
| hrm\shell\ExternalProcess | ping() |
Refactor: why is this saving to hrm_tmp? |
| hrm\shell\ExternalProcess | runHuygensTemplate() |
Improve the pid acquisition process. Better management of file handles. Refactor! |
| hrm\shell\LocalExternalProcess | existsHuygensProcess() |
Refactor! |
| hrm\shell\LocalExternalProcess | isHuygensProcessSleeping() |
Is it correct that this always return false? Refactor: why is this saving to hrm_tmp? |
| hrm\shell\LocalExternalProcess | rewakeHuygensProcess() |
This function is currenly doing nothing. |
| hrm\shell\LocalExternalProcess | execute() |
Why sleeping 5 seconds? |
| hrm\Util | isValueInArray() |
Is this really necessary? |
| hrm\UtilV2 | getMaxUploadFileSize() |
Does the php.ini value play a role in the chunk uploader (i.e., does it apply to the file chunk size)? |
Properties summary
| hrm\shell\ExternalProcess | $host |
Implement better management of multiple hosts |