Class HuygensTemplate
Converts deconvolution parameters into a Huygens batch template.
This class builds Tcl-compliant nested lists which summarize the tasks and
properties of the deconvolution job. Tasks describing the thumbnail products
of an HRM deconvolution job are also included. The resulting structure is
a Huygens batch template formed by nested lists.
Template structure:
- 1 Job: - Job info. - Job tasks list: - Set environment - Set task ID - Set environment: - resultDir - perJobThreadCnt - concurrentJobCnt - exportFormat - timeOut - Set image processing list: - Set image processing info: - state - tag - timeStartAbs - timeOut - Set image processing subtasks: - imgOpen - setp - deconvolution algorithm: one per channel - previewGen (one per thumbnail type) - imgSave - Set subtasks details (imgOpen, setp,..)
Namespace: hrm
Located at HuygensTemplate.php
Methods summary
public
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__construct( hrm\job\JobDescription $jobDescription )
Constructor
Parameters
- $jobDescription
- JobDescription object
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public
string|integer
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getSamplingSizeX( )
Gets the sampling distance in the X direction.
Gets the sampling distance in the X direction.
Returns
string|integer The sampling in the X direction, if specified by
the user.
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public
string|integer
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#
getSamplingSizeY( )
Gets the sampling distance in the Y direction.
Gets the sampling distance in the Y direction.
Returns
string|integer The sampling in the Y direction, if specified by
the user.
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public
string|integer
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#
getSamplingSizeZ( )
Gets the sampling distance in the Z direction.
Gets the sampling distance in the Z direction.
Returns
string|integer The sampling in the Z direction, if specified by
the user.
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public
string|float
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getSamplingSizeT( )
Gets the sampling interval in T.
Gets the sampling interval in T.
Returns
string|float
The sampling in T, if specified by the user.
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Properties summary
public
string
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$template
Batch template containing the deconvolution job + thumbnail tasks.
Batch template containing the deconvolution job + thumbnail tasks.
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public
boolean
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$compareZviews
A boolean to know whether a Z slicer will be created.
A boolean to know whether a Z slicer will be created.
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public
boolean
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$compareTviews
A boolean to know whether a T slicer will be created.
A boolean to know whether a T slicer will be created.
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